You did not mention that you are not only using CGI, but also your webserver application, i.e. your own server software?
Is that webserver also a FPC application?
From there we can evaluate what is happening, in this case not happening.
For example: Is it derived from TFPHttpServer? There have been a couple of changes between 3.2.2 and trunk regarding session management, but only for session cookies. This may be related.
I am also running some FPC based servers on my Raspberry Pi farm, so I am happy to debug that issue.
What exactly is your server software? I can also help with Apache, but that deletes session files by default.