Yes, I see this all the time. As far as I know, it happens when opening projects in different widget sets or even different OS themes. Usually, when opening projects on the same system (and configuration), there are no changes.
As a Git user, I also often see property reordering changes (LFM lines retain their value, but change their order). This happens when opening a project in a different version of Lazarus. There are reasons why developers reorder properties in the source code, and LFM files follow suit.