The best thing you can do if you have your own specific distro, is to copy over the libraries from your RPi system towards your cross (Windows) system.
I, for myself, have different libraries (Linux/ARM) available for
* Ubuntu on BeagleBone Black
* Arch on RPi2
However, in your case, I would suggest using a mainstream distro.
And prepare yourself for RPi2 and RPi3.
Makes life easier.